Function
calculateMateIndices
Calculates a string that maps the readId of a read to the readId of its mate.
calculateMateIndices(mateIndices, store)
Include Headers
seqan/store.h
Parameters
mateIndices
The resulting string of mate indices.
Remarks: This string is accordingly resized and can be addressed by the readId.
store
The fragment store.
Remarks
Entries of reads without a mate contain INVALID_ID.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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