createQGramIndexSAOnly

Function

Builds the suffix array of a q-gram index on a sequence.

createQGramIndexSAOnly(sa, text, shape, stepSize)

Include Headers

seqan/index.h

Parameters

sa	The resulting list in which all q-grams are sorted alphabetically.
text	The sequence.
shape	The shape to be used. q is the length of this shape Types: Shape
stepSize	Store every stepSize'th q-gram in the index.

Remarks

This function should not be called directly. Please use indexCreate or indexRequire. The resulting tables must have appropriate size before calling this function.

Member of

IndexQGram

SeqAn - Sequence Analysis Library - www.seqan.de