Function
extendSeed
Extends a seed.
extendSeed(seed, database, query, direction, MatchExtend)
extendSeed(seed, database, query, direction, scoreMatrix, scoreDropOff, {UngappedXDrop, GappedXDrop})
Include Headers
seqan/seeds.h
Parameters
seed
The seed to extend.
Types: Seed
query
The query sequence (vertical).
Types: String
database
The database sequence (horizontal).
Types: String
direction
Defines the direction in which the seed should be extended.
scoreDropOff
The score drop after which the extension should stop. The extension stops if this value is exceeded.
Remarks: Only used for the algorithms UngappedXDrop and GappedXDrop
scoreMatrix
The scoring scheme.
Remarks: Only used for the algorithms UngappedXDrop and GappedXDrop
Remarks
You can use the tags, MatchExtend, UngappedXDrop, and GappedXDrop.
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SeqAn - Sequence Analysis Library - www.seqan.de
 

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