generateSequence

Function

generateSequence

Generates random state and alphabet sequences of a given HMM.

generateSequence(hmm, sequences, states, numSeq, maxLength)

Include Headers

seqan/graph_algorithms.h

Parameters

hmm	In-parameter:Input HMM. Types: Hmm
sequences	The StringSet of alphabet sequences. The StringSet of state sequences. Types: StringSet, StringSet
numSeq	The number of sequences to generate.
maxLength	The maximum length of the sequences. Remarks: Sequences might be shorter if the end state is reached prior to maxLength.

Remarks

Because of silent states, generated alphabet and state sequences might have different length.

Return Values

void

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