createCompressedSa

Function

createCompressedSa

This functions creates a compressed suffix array with a specified compression factor.

void createCompressedSa(compressedSA, completeSA, compressionFactor [,offset])

Include Headers

seqan/index.h

Parameters

offset:Number of elements at the beginning which should contain the default value.

compressedSA	The compressed suffix array Types: CompressedSA
completeSA	A complete suffix array containing all values
compressionFactor	The compression factor. Types: UnsignedIntegerConcept Remarks: A compression factor of x means that the compressed suffix array specifically stores a value for every x values in the complete suffix array.

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