Score

Member Function

Score

Constructor

Score<TValue, Simple>()

Score<TValue, Simple>(score)

Score<TValue, Simple>(match, mismatch, gap [, gap_open])

Parameters

score	Other Score object. (copy constructor)
match	TValue object. Default: 0
mismatch	TValue object. Default: -1
gap	TValue object. Default: -1 Remarks: The score for a single blank in a gap (linear gap costs).
gap_open	TValue object. Default: gap Remarks: The score for the first blank in a gap (affine gap costs).

Remarks

If both gap and gap_open are specified, the total score of a length n gap is gap_open (n-1)*gap.

Note: Usually mismatch, gap, and gap_open are negative values.

Member of

SeqAn - Sequence Analysis Library - www.seqan.de