Metafunction
SequenceEntryForScore
Returns representation type for a character of a position in a sequence.
This is used for unified interfaces for position dependent and independent scores.
SequenceEntryForScore<TScore, TSequence>::Type
Include Headers
seqan/score.h
Parameters
TScore
The score type to use.
Types: Score
TSequence
The underlying sequence of the alignments or gaps.
Member of
Functions
scoreReturns the score for aligning the characters valH and valV.
scoreGapExtendHorizontalReturns the score for extending a horizontal gap after entry1.
scoreGapExtendVerticalReturns the score for extending a vertical gap after entry2.
scoreGapHorizontalReturns the score for a horizontal gap after entry1.
scoreGapOpenHorizontalReturns the score for opening a horizontal gap after entry1.
scoreGapOpenVerticalReturns the score for opening a vertical gap after entry2.
scoreGapVerticalReturns the score for a vertical gap after entry2.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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