Class Specialization
IndexSa
An index based on a suffix array.
Index
IndexSa
Index<TText, IndexSa<> >
Include Headers
seqan/index_extras.h
Parameters
TText
The text type.
Specialization of
Metafunctions
FibreType of a specific container member (fibre). (Index)
SAValueThe default alphabet type of a suffix array, i.e. the type to store a position of a string or string set. (Index)
Functions
beginThe begin of a container. (Index)
clearResets an object. (Index)
countSequencesReturn the number of sequences in an index' underlying text. (Index)
endThe end of a container. (Index)
getFibreReturns a specific fibre of a container. (Index)
indexCreateCreates a specific Fibre. (Index)
indexRequireOn-demand creation of a specific Fibre. (Index)
indexSuppliedReturns whether a specific Fibre is present. (Index)
lengthThe number of items/characters. (Index)
setHaystackSets the haystack of a Finder object. (Index)
SeqAn - Sequence Analysis Library - www.seqan.de
 

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