Tag
Index Find Algorithm
Tag to specify the index search algorithm.
Include Headers
seqan/index.h
Remarks
These tag can be used to specify the find algorithm for Index based substring searches.
Tags
EsaFindMlr
Binary search with mlr-heuristic.
Remarks: Exact string matching using a suffix array binary search with the mlr-heuristic.
EsaFindLcpe
Binary search using lcp values.
Remarks: Exact string matching using a suffix array binary search and a lcp-interval tree.
FinderSTree
Suffix tree search.
Remarks: Exact string matching using a suffix tree.
QGramFindLookup
q-gram search. Finds q-grams in a IndexQGram index using the hash table.
PizzaChiliFinder
Finds an occurrence in a Pizza & Chili Index index.
Remarks: The actual algorithm used for searching depends on the Pizza & Chili Index Tags used.
SeqAn - Sequence Analysis Library - www.seqan.de
 

Page built @2013/07/11 09:12:20