Class

AFScore

Used to specify parameters and methods for alignment-free sequence comparison

Include Headers

seqan/alignment_free.h

Parameters

Method to use: N2, D2, D2Star, D2z |

Specializations

D2 computes the inner product of the kmer count vectors | |

D2Star computes the inner product of the standardised kmer count vectors | |

D2z computes a z-score of the inner product of kmer count vectors | |

N2 computes the inner product of the standardised neighbourhood kmer count vectors |

Functions

Computes the pairwise similarity scores for a set of sequences |

See Also

SeqAn - Sequence Analysis Library - www.seqan.de