Class
AlignConfig
The AlignConfig class encapsulates how DP is carried out. It indicates at what ends gaps are free, the so-called free ends-space alignments.
AlignConfig<bool TOP, bool LEFT, bool RIGHT, bool BOTTOM, TSpec>
Include Headers
seqan/align.h
Parameters
TOP
If true then 0's in top row.
Default: false
LEFT
If true then 0's in the left column.
Default: false
RIGHT
If true then maximum is also searched in the last column.
Default: false
BOTTOM
If true then maximum is also searched in the last row.
Default: false
TSpec
The specializing type.
Metafunctions: Spec
Default: Default, see Default.
Functions
bandedChainAlignmentComputes the best global pairwise alignment between two sequences given a non-empty seed chain.
globalAlignmentComputes the best global pairwise alignment.
globalAlignmentScoreComputes the best global pairwise alignment score.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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