Class
BedIOContext
The I/O context to use for BED I/O.
Include Headers
bed_io.h
Parameters
The name store class. | |
The name store cache class. Default: NameStoreCache<TNameStore> |
Typedefs
| The name store class. | |
| The name store cache class. |
Member Functions
| Constructor. |
Functions
| Return reference to name store from BedIOContext. | |
| Return reference to name store cache from BedIOContext. |
Examples
NameStoreCache<StringSet<CharString> > nameStoreCache(nameStore);
BedIOContext<StringSet<CharString> > bedIOContext(nameStore, nameStoreCache);
// ...
Using a BedIOContext with a FragmentStore.
typedef NameStoreCache<TNameStore> TNameStoreCache;
FragmentStore<> store;
// Optionally, do something with store.
typedef BedIOContext<TNameStore, TNameStoreCache> TBedIOContext;
TBedIOContext bedIOContext(store.contigNameStore, store.contigNameStoreCache);
// ...
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