LocalAlignmentEnumerator

Class

Enumerate local alignments using the Waterman-Eggert algorithm.

This is an abstract base class for the alignment enumeration; the specializations provide the actual implementaiton of banded and unbanded local aligment search.

LocalAlignmentEnumerator


Banded LocalAlignmentEnumerator		Unbanded LocalAlignmentEnumerator

LocalAlignmentEnumerator<TScore, TSpec>

Include Headers

seqan/align.h

Parameters

TScore	The Score type to use. Types: Score
TSpec	Specialization tag.

Specializations

Banded LocalAlignmentEnumerator	Banded enumeration of local alignments using the Waterman-Eggert algorithm.
Unbanded LocalAlignmentEnumerator	Unbanded enumeration of local alignments using the Waterman-Eggert algorithm.

Functions

getScore	Compute next suboptimal local alignment.
nextLocalAlignment	Compute next suboptimal local alignment.

Examples

See the specializations for usage examples.