A rank dictionary is a data structure to store the rank of an element of a sequence at every position of the sequence.
Include Headers
The rank dictionary specialisation.
Default: WaveletTree
SequenceBitMaskThe string set bit string dictionary is a string set of rank support bit strings for constant time acces of the rank of a specified character at a specified position.
WaveletTreeA wavelet tree is a tree like binary encoding of a text.
FibreType of a specific container member (fibre).
clearClears the rank dictionary.
countOccurrencesReturns the number of occurrences of a specified character from the start to a specified position.
createRankDictionaryThis functions creates the dictionary.
createSentinelRankDictionaryThis functions creates the dictionary structure.
emptyReturns whether or not the rank dictionary is empty.
getFibreReturns a specific fibre of a dictionary.
getSentinelSubstituteReturns the character used to substitute the sentinel sign.
getValueReturns the character of a specified position.
openThis functions loads a dictionary from disk.
saveThis functions saves a dictionary to disk.
setSentinelPositionSets the sentinel position..
setSentinelSubstituteSets the character used to substitute the sentinel sign.
SeqAn - Sequence Analysis Library -

Page built @2013/07/11 09:12:35