Concept
SequenceConcept
Concept for sequences.
Concept Definition
Refines
Required Metafunctions
Specifies default kind of iterator returned by functions. (ContainerConcept) | |
Specifies default kind of iterator. (ContainerConcept) | |
Type of iterator objects that are used to traverse the container. (ContainerConcept) |
Required Functions
Concatenate two containers. (ContainerConcept) | |
Appends a value to a container. (ContainerConcept) | |
Assigns one object to another object. (AssignableConcept) | |
Assigns value to item. (ContainerConcept) | |
Determines whether an iterator is at the beginning position. (ContainerConcept) | |
Determines whether an iterator is at the end position. (ContainerConcept) | |
The last item in container. (ContainerConcept) | |
The maximal length. (ContainerConcept) | |
Capacity for generous expansion. (ContainerConcept) | |
Test a container for being empty. (ContainerConcept) | |
The end of a container. (ContainerConcept) | |
End position of object in host. (ContainerConcept) | |
Erases a part of a container (ContainerConcept) | |
Deletes the last item of a container and reduces its size by 1. The container must have a size greater than or equal to 1. (ContainerConcept) | |
The first item in container. (ContainerConcept) | |
Access to the value. (ContainerConcept) | |
Inserts a sequence into a container. (ContainerConcept) | |
Inserts a single value into a container. (ContainerConcept) | |
The number of items/characters. (ContainerConcept) | |
Assigns value to item. (ContainerConcept) | |
C++ built-in Assignment operator. (AssignableConcept) | |
Position of an iterator. (ContainerConcept) | |
Replaces a part of a container with another container. (ContainerConcept) | |
Increases the capacity. (ContainerConcept) | |
Resizes a container. If the new length exceeds the old length the new elements are filled with copies of | |
Makes free space in container (ContainerConcept) | |
Resizes container to minimum capacity (ContainerConcept) | |
Reference to the value. (ContainerConcept) |
Include Headers
seqan/basic.h
Implemented by
Efficient storage of gaps for a sequence. |
Used By Function
Metafunctions
Returns representation type for a character of a position in a sequence. |
Functions
Adds a seed to an existing SeedSet using different algorithms for local chaining. | |
Assigns value to item. (ContainerConcept) | |
Add or update a key-value pair of the current annotation. | |
The last item in container. (ContainerConcept) | |
The begin of a container. (ContainerConcept) | |
Begin position of object in host. (ContainerConcept) | |
The end of a container. (ContainerConcept) | |
End position of object in host. (ContainerConcept) | |
The first item in container. (ContainerConcept) | |
Returns the identifier of the current annotation. | |
Returns the identifier of the parent node in the annotation tree of the current annotation. | |
Returns the type name of the current annotation. | |
Access to the value. (ContainerConcept) | |
Given a key, retrieve its value of the current annotation. | |
The number of items/characters. (ContainerConcept) | |
Assigns value to item. (ContainerConcept) | |
Position of an iterator. (ContainerConcept) | |
Helper function for element access, depending on score type. | |
Sets the identifier of the current annotation. | |
Sets the type name of the current annotation. | |
Write one FASTA or FASTQ record. |
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