buildAlignmentGraph

Function

buildAlignmentGraph

Builds an Alignment Graph from a set of input alignments.

buildAlignmentGraph(matches, [scores,] outGraph, tag)
buildAlignmentGraph(matches, scores, outGraph, scoreType, ReScore)

Include Headers

seqan/graph_msa.h

Parameters

matches	A string of alignments, e.g. Fragment or Align. Types: String
scores	A string of scores. Types: String
outGraph	An alignment graph with a set string set. Types: Alignment Graph
scoreType	A score type. Types: Score
tag	A tag indicating the scoring of matches. Types: Alignment Graph Combination

Remarks

Calls the function matchRefinement and adapts scores according to tag.

Return Values

void

Member of

SeqAn - Sequence Analysis Library - www.seqan.de