Function
convertAlignment
Converts an alignment graph into an alignment matrix.
convertAlignment(g, component, order, compLength)
convertAlignment(g, matrix)
Include Headers
seqan/graph_align.h
Parameters
g
Alignment graph to convert.
In-parameter: An alignment graph.
component
Vertex to component mapping.
order
The order of the component graph when sorting topologically.
compLength
Component sizes.
matrix
Out-parameter: A string that represents an alignment matrix.
Remarks
The variant with component and order computes a topological sorting of connected components.
Return Values
A bool that is true iff the alignment graph is a valid alignment
SeqAn - Sequence Analysis Library - www.seqan.de
 

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