findMotif

Function

findMotif

Represents the main function which is used to start the search for noticeable motif patterns.

findMotif(finder,dataset,seq_model)

Include Headers

seqan/find_motif.h

Parameters

finder	The MotifFinder object. Types: MotifFinder
dataset	The dataset object representing the input sequences. Types: StringSet
seq_model	The seq_model object. Types: Omops, Oops, Tcm, Zoops Remarks: The sequence models rely on different assumptions about the distribution of motif occurrences across the sample sequences.

Remarks

The PROJECTION algorithm is able to run in Oops, Zoops and Tcm mode.

The ePatternBranching algorithm is able to run in Oops and Omops mode.

The Pms1 and Pmsp algorithm is able to run in Oops, Omops, Zoops and Tcm mode.

Member of

Example Programs

SeqAn - Sequence Analysis Library - www.seqan.de