Function
getClrRange
Get the "clear" range of a read alignment.
getClrRange(fragStore, alignEl, begClr, endClr)
Include Headers
seqan/store.h
Parameters
fragStore
Fragment Store to work on.
alignEl
Read alignment element.
begClr
Start of the clear range.
endClr
End of the clear range.
Remarks
The clear range of a read alignment is the range of the part of the alignment that is not clipped.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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