Function

matchRefinement

Refines (i.e. cuts into smaller parts) a set of pairwise segment
matches in such a way that none of the segments partly overlap. They are either
identical (fully overlapping) or non-overlapping.

Include Headers

seqan/graph_align.h

Parameters

The set of matches. | |

The scoring scheme used to score the refined matches (scores are attached to
edges in the refined Alignment Graph). Types: Score Remarks: If no scoring scheme is given, all edges get weight 1. | |

The StringSet containing the sequences which the matches lie on. Types: StringSet | |

The resulting refined set of matches stored in a graph. Types: Alignment Graph |

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