normalize

Function

normalize

Determines the normalized frequencies.

normalize(container)

normalize(profile,pseudocount_mode)

Include Headers

seqan/find_motif.h

Parameters

container	The FrequencyDistribution or StringSet (of frequency distributions) object. Types: FrequencyDistribution, StringSet
profile	A StringSet of frequency distributions. Types: StringSet
pseudocount_mode	The Pseudocount object for determining the pseudocount method. Types: Pseudocount

Remarks

If necessary, pseudocounts are first added to the frequency values before normalizing them when the parameter container is a StringSet of frequency distributions (profile).

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