Function
readRegion
Load the infix of a sequence from a FaiIndex.
The given region is loaded from the indexed FASTA file.
readRegion(str, faiIndex, refId, beginPos, endPos)
readRegion(str, faiIndex, region);
Include Headers
seqan/seq_io.h
Parameters
str
The sequence infix is written into this string.
Types: String
faiIndex
The FaiIndex to query.
Types: FaiIndex
refId
The index of the reference in the file.
Types: unsigned
beginPos
The begin position of the infix to write to str.
Types: unsigned
endPos
The end position of the infix to write to str.
Types: unsigned
region
The GenomicRegion to read.
Member of
SeqAn - Sequence Analysis Library - www.seqan.de
 

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