Function
clippedBeginPosition
Return the begin position of the clipping in the unclipped gapped sequence.
TPosition clippedBeginPosition(gaps)
Include Headers
seqan/align.h
Parameters
gaps
The Gaps object to query.
Types: Gaps
Return Values
The begin position of the current clipped view in the unclipped gapped sequence.
Types: Position
Member of
Examples
In the following gaps configuration, the result of clippedBeginPosition(gaps) is 1.
clipping                   [     )
  (half-open interval)
 
gapped sequence:          X--XXX-XX-
 
source position:          0111234456
unclipped view position:  0123456789
clipped view position:     0123456
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