Enums
BAM I/O
BamFlagsShortcuts to the bitmask flags for BAM/SAM files.
BamHeaderRecordTypeEnumeration for the header record type.
BamSortOrderEnumeration for the header record type.
BamStream::FormatSelect the format to use for reading/writing.
BamStream::OperationModeSelect the operation mode of a BamStream.
BED I/O
BedStream::ModeOpen mode for the BedStream class.
Fragment Store
Predefined Annotation TypesPredefined annotation type ids.
GFF I/O
GffStream::FileFormatFile format for writing in the GffStream class.
GffStream::ModeOpen mode for the GffStream class.
Input/Output
FileMappingAdviseEnum with mmap advise values.
FileMappingModeFlags to define the mapping mode of mapFileSegment.
FileOpenModeFlags to select the open mode of a File or external string.
SequenceStream::FileFormatSelect the file format to read/write.
SequenceStream::FileTypeSelect the file type to read/write.
SequenceStream::OperationModeSelect the operation mode of a SequenceStream.
TokenizeResultEnum with return values for Tokenizing operations.
Seed Handling
Extension DirectionThe direction in which a seed should be extended.
Sequences
FileMappingAdviseEnum with mmap advise values.
FileMappingModeFlags to define the mapping mode of mapFileSegment.
VCF I/O
VcfStream::ModeOpen mode for the VcfStream class.
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