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adviseFileSegment
appendSeqs
assignCroppedSeqId
assignQual
assignQualId
assignSeq
assignSeqId
asyncReadAt
asyncWriteAt
atEnd (RecordReader)
attachToFile
cancel
cancelFileSegment
checkEof
clear (FaiIndex)
clear (GenomicRegion)
clear (GffRecord)
close (FileMapping)
close
closeAndResize (FileMapping)
countLine
endsWith
flush
flushFileSegment
getIdByName (FaiIndex)
goNext (RecordReader)
goNext
guessFileFormat
guessFormat
guessFormatFromFilename
guessStreamFormat
isDirect
isalnum
isalpha
isblank
iscntrl
isdigit
isgraph
isprint
isspace
length (FileMapping)
length
lexicalCast
lexicalCast2
loadScoreMatrix
mapFileSegment
nextIs (RecordReader)
numSeqs (FaiIndex)
open (FileMapping)
open
openTemp (FileMapping)
openTemp
parse (GenomicRegion)
position (RecordReader)
read (FaiIndex)
read (FileFormat)
read
read2
readAlphaNums
readAt
readDigits
readDna5IgnoringWhitespaces
readFasta
readFeature
readFloat
readGraphs
readIdentifier
readLetters
readLine
readLineStripTrailingBlanks
readLineType
readMeta
readNChars
readNCharsIgnoringWhitespace
readRecord (GffRecord)
readRecord
readRegion (FaiIndex)
readSequence (FaiIndex)
readUntilBlank
readUntilChar
readUntilOneOf
readUntilTabOrLineBreak
readUntilWhitespace
remapFileSegment
resize (FileMapping)
resize
resultCode (RecordReader)
rewind
seek
sequenceLength (FaiIndex)
sequenceName (FaiIndex)
setEof
setPosition (RecordReader)
size
skipBlanks
skipChar
skipLine
skipNChars
skipNCharsIgnoringWhitespace
skipUntilBlank
skipUntilChar
skipUntilGraph
skipUntilLineBeginsWithChar
skipUntilLineBeginsWithOneCharOfStr
skipUntilLineBeginsWithStr
skipUntilString
skipUntilWhitespace
skipWhitespaces
split
splitEmblHeader
splitGenBankHeader
startFirstPass
startSecondPass
startsWith
streamEof
streamError
streamFlush
streamPeek
streamPut
streamReadBlock
streamReadChar
streamSeek
streamTell
streamWriteBlock
streamWriteChar
tell
unmapFileSegment
value (RecordReader)
waitFor
write (FaiIndex)
write (FileFormat)
write (Score Matrix)
write
write2
writeAt
writeRecord (GffRecord)
writeRecord
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