IntervalTree

Member Function

IntervalTree

Constructor

IntervalTree()

IntervalTree(String<TInterval> intervals)

IntervalTree(String<TInterval> intervals, TValue center)

IntervalTree(String<TInterval> intervals, Tag<TTagSpec> const tag)

IntervalTree(intervalBegins, intervalEnds, len)

IntervalTree(intervalBegins, intervalEnds, intervalCargos, len)

Parameters

intervals	Container of intervals. Types: Alloc String Remarks: A string of IntervalAndCargo<TValue, TCargo> objects, see IntervalAndCargo.
intervalBegins	Iterator pointing to begin position of first interval.
intervalEnds	Iterator pointing to end position of first interval.
intervalCargos	Iterator pointing to cargos/ids for intervals.
len	Number of intervals to store in tree.
tag	Tag for tree construction method; ComputeCenter Default: ComputeCenter

Remarks

center of root node is computed by _calcIntervalTreeRootCenter

Member of

SeqAn - Sequence Analysis Library - www.seqan.de