Class Specialization
AbndmAlgo
Approximate Backward Nondeterministic Dawg Matching algorithm. Approximate string matching using bit parallelism.
Pattern
AbndmAlgo
Pattern<TNeedle, AbndmAlgo>
Include Headers
seqan/find.h
Parameters
TNeedle
The needle type.
Types: String
Remarks
The types of the needle and the haystack have to match.
Specialization of
Metafunctions
HostType of the object a given object depends on. (Pattern)
NeedleReturns the needle type of a Pattern type. (Pattern)
ScoringSchemeReturns the scoring scheme of an approximate searching algorithm. (Pattern)
Functions
findSearch for a Pattern in a Finder object. (Pattern)
findBeginSearch the begin of an approximate match. (Pattern)
getScoreScore of the last found match in approximate searching.
hostThe object a given object depends on. (Pattern)
needleReturns the needle of a Pattern object (not implemented for some online-algorithms). (Pattern)
positionPosition of an iterator. (Pattern)
scoreLimitThe minimal score a match must reach in approximate searching.
scoringSchemeThe scoring scheme used for finding or aligning. (Pattern)
setNeedleSets the needle of a Pattern object and optionally induces preprocessing. (Pattern)
setScoreLimitSets the minimal score a match must reach in approximate searching.
setScoringSchemeSets the scoring scheme used for finding or aligning. (Pattern)
SeqAn - Sequence Analysis Library - www.seqan.de
 

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