Class Specialization
D2Star AFScore
D2Star computes the inner product of the standardised kmer count vectors
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D2Star AFScore | |||||||
Include Headers
seqan/alignment_free.h
Remarks
D2Star can be used for alignment-free sequence comparison, this version calculates the background model on the concatenation of both sequences
Specialization of
Data Members
| Order of the background model | |
| Size of the kmers | |
| When specified, all kmerWeights will be written to this file, for every sequence, and for every sequence comparison |
Member Functions
| Constructor |
Functions
| Computes the pairwise similarity scores for a set of sequences (AFScore) |
SeqAn - Sequence Analysis Library - www.seqan.de