Class Specialization

D2z AFScore

D2z computes a z-score of the inner product of kmer count vectors

D2z AFScore |

Include Headers

seqan/alignment_free.h

Remarks

D2z can be used for alignment-free sequence comparison. The algorithm differs from the original implementation by the way masked sequences are handled

Specialization of

Data Members

Order of the background model | |

Size of the kmers |

Member Functions

Constructor |

Functions

Computes the pairwise similarity scores for a set of sequences (AFScore) |

SeqAn - Sequence Analysis Library - www.seqan.de