Class Specialization
FMIndex
An index based on the Burrows-Wheeler transform.
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FMIndex | |||||||
Include Headers
seqan/index.h
Parameters
The text type. | |
Occurrence table specialisation. Default: Tag.WT Remarks: The tags are really shortcuts for the different SentinelRankDictionarys | |
FM index specialisation. Types: CompressText Default: void |
Specialization of
Metafunctions
| Type of a specific container member (fibre). (Index) | |
| The default alphabet type of a suffix array, i.e. the type to store a position of a string or string set. (Index) |
Functions
| The begin of a container. | |
| Resets an object. (Index) | |
| Return the number of sequences in an index' underlying text. (Index) | |
| The end of a container. (Index) | |
| Returns a specific fibre of a container. (Index) | |
| Creates a specific Fibre. (Index) | |
| On-demand creation of a specific Fibre. (Index) | |
| Shortcut for | |
| Returns whether a specific Fibre is present. (Index) | |
| Shortcut for | |
| The number of characters in the underlying text of the index is returned. (Index) | |
| This functions opens an index from disk. (Index) | |
| This functions saves an index to disk. (Index) | |
| Sets the haystack of a Finder object. (Index) | |
| This function computes the position of a specified position in the suffix array (additionally containing entries for the sentinels. The returned position correspond to the suffix array of the original text without sentinels. |
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de