Class Specialization
An index based on a suffix array.
Index<TText, IndexSa<> >
Include Headers
The text type.
Specialization of
FibreType of a specific container member (fibre). (Index)
SAValueThe default alphabet type of a suffix array, i.e. the type to store a position of a string or string set. (Index)
beginReturns an iterator pointing to the root node of the virtual string tree/trie of an index. The only exception are Postorder iterators, where begin returns an iterator pointing to the leftmost node in the tree/trie.
clearResets an object. (Index)
countSequencesReturn the number of sequences in an index' underlying text. (Index)
endThe end of a container. (Index)
getFibreReturns a specific fibre of a container. (Index)
indexCreateCreates a specific Fibre. (Index)
indexRequireOn-demand creation of a specific Fibre. (Index)
indexSAShortcut for getFibre(.., FibreSA). (Index)
indexSuppliedReturns whether a specific Fibre is present. (Index)
indexTextShortcut for getFibre(index, FibreText()). (Index)
lengthThe number of characters in the underlying text of the index is returned. (Index)
openThis functions opens an index from disk. (Index)
saveThis functions saves an index to disk. (Index)
setHaystackSets the haystack of a Finder object. (Index)
SeqAn - Sequence Analysis Library -

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