Class Specialization
SequenceBitMask
The string set bit string dictionary is a string set of rank support bit strings for constant time acces of the rank of a specified character at a specified position.
RankDictionary
SequenceBitMask
SequenceBitMask<TValue>
Include Headers
seqan/index.h
Parameters
TValue
The value type of the .
Remarks
This data structure is optimized for very small alphabets, such as Dna or Dna5. Consider using a WaveletTree if your alphabet size is larger.
Specialization of
Metafunctions
FibreType of a specific container member (fibre). (RankDictionary)
Functions
clearClears the rank dictionary. (RankDictionary)
countOccurrencesReturns the number of occurrences of a specified character from the start to a specified position. (RankDictionary)
createRankDictionaryThis functions creates the dictionary. (RankDictionary)
createSentinelRankDictionaryThis functions creates the dictionary structure. (RankDictionary)
emptyReturns whether or not the rank dictionary is empty. (RankDictionary)
getFibreReturns a specific fibre of a dictionary. (RankDictionary)
getSentinelSubstituteReturns the character used to substitute the sentinel sign. (RankDictionary)
getValueReturns the character of a specified position. (RankDictionary)
openThis functions loads a dictionary from disk. (RankDictionary)
saveThis functions saves a dictionary to disk. (RankDictionary)
setSentinelPositionSets the sentinel position.. (RankDictionary)
setSentinelSubstituteSets the character used to substitute the sentinel sign. (RankDictionary)
SeqAn - Sequence Analysis Library - www.seqan.de
 

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