Class Specialization
SequenceBitMask
The string set bit string dictionary is a string set of rank support bit strings for constant time acces
of the rank of a specified character at a specified position.
SequenceBitMask |
Include Headers
seqan/index.h
Parameters
The value type of the . |
Remarks
This data structure is optimized for very small alphabets, such as Dna or Dna5. Consider using a WaveletTree if your alphabet size is larger.
Specialization of
Metafunctions
Type of a specific container member (fibre). (RankDictionary) |
Functions
Clears the rank dictionary. (RankDictionary) | |
Returns the number of occurrences of a specified character from the start to a specified position. (RankDictionary) | |
This functions creates the dictionary. (RankDictionary) | |
This functions creates the dictionary structure. (RankDictionary) | |
Returns whether or not the rank dictionary is empty. (RankDictionary) | |
Returns a specific fibre of a dictionary. (RankDictionary) | |
Returns the character used to substitute the sentinel sign. (RankDictionary) | |
Returns the character of a specified position. (RankDictionary) | |
This functions loads a dictionary from disk. (RankDictionary) | |
This functions saves a dictionary to disk. (RankDictionary) | |
Sets the sentinel position.. (RankDictionary) | |
Sets the character used to substitute the sentinel sign. (RankDictionary) |
SeqAn - Sequence Analysis Library - www.seqan.de