ESA Index Fibres

Tag

ESA Index Fibres

Tag to select a specific fibre (e.g. table, object, ...) of an ESA index.

Include Headers

seqan/index.h

Remarks

These tags can be used to get Fibres of an Enhanced Suffix Array based Index.

Metafunctions

Type of a specific container member (fibre).

Functions

getFibre	Returns a specific fibre of a container.
indexCreate	Creates a specific Fibre.
indexRequire	On-demand creation of a specific Fibre.
indexSupplied	Returns whether a specific Fibre is present.

Tags

EsaText	The original text the index should be based on.
EsaRawText	The raw text the index is really based on. Remarks: EsaText and EsaRawText fibres are equal by default. They differ if the index text is a set of strings. Then, raw text is the concatenation of all strings in this set.
EsaSA	The suffix array. Remarks: The suffix array contains the indices of all suffices of EsaRawText in lexicographical order. Fibre returns a String over the alphabet of the SAValue of TIndex.
EsaLcp	The lcp table. Remarks: The lcp table contains the lcp-value of two adjacent suffices in the suffix array EsaSA. Fibre returns a String over the alphabet of a size type.
EsaChildtab	The child table. Remarks: The child table contains structural information of the suffix tree (see Abhouelda et al.). Fibre returns a String over the alphabet of a size type.
EsaBwt	The Burrows-Wheeler table. Remarks: The Burrows-Wheeler table contains the Burrows-Wheeler transformation of EsaRawText. The entries are the characters left of the corresponding suffix in the suffix array EsaSA. Fibre returns the same type for EsaRawText and for EsaBwt.