Tag
File Format
A file format.
Include Headers
seqan/file.h
Functions
| Appends all sequences stored in files of directory to a StringSet. | |
| Extracts the sequence id up to the first whitespace of a sequence file fragment. | |
| Extracts the quality values of a sequence file fragment. | |
| Extracts the quality value id of a sequence file fragment. | |
| Extracts the sequence part of a sequence file fragment. | |
| Extracts the sequence id of a sequence file fragment. | |
| Guesses a file format from the contents of a sequence file. | |
| Guesses a file format from a sequence file name. | |
| check whether the data provided by reader is (one of) the specified format(s). | |
| Prints a window of the visible layout of reads into a outstream. | |
| Loads records from a file. | |
| Divides the contents of a sequence file into sequence file fragments separated by a file format specific delimiter. | |
| Saves records to a file. |
Tags
Gff annotation file. | |
Gtf annotation file. | |
FASTQ file format for sequences.
FASTQ file format for sequences. | |
QSeq format, used for most of the Illumina read files. | |
Raw file format for sequences.
The file contains data in a raw format. | |
CGViz file format for sequences. Only output. | |
FASTA alignment file format for sequences. | |
EMBL format for sequences. | |
Genbank format for sequences from the Genbank database. | |
FASTA file format for sequences.
FASTA file format for sequences. | |
Score matrix file. | |
Amos message file. | |
Ucsc Genome Browser annotation file (a.k.a. knownGene format). | |
Ucsc Genome Browser isoforms file (a.k.a. knownIsoforms format). |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de