Class
AlignmentStatsStatistics about a tabular alignment.
Statistics about a tabular alignment.
Defined in | <seqan/align.h> |
---|---|
Signature |
struct AlignmentStats;
|
Member Function Overview
-
AlignmentStats::AlignmentStats();
Constructor
Interface Function Overview
-
void clear(stats);
Resets all members to 0.
Member Variable Overview
-
int AlignmentStats::alignmentScore
The resulting alignment score. -
unsigned AlignmentStats::numGapExtensions
Number of gap extension events. -
unsigned AlignmentStats::numGapOpens
Number of gap open events. -
unsigned AlignmentStats::numMatches
Number of match (identity) events. -
unsigned AlignmentStats::numMismatches
Number of mismatch (not identity) events. -
unsigned AlignmentStats::numNegativeScores
Number of residues aligned with negative score. -
unsigned AlignmentStats::numPositiveScores
Number of residues aligned with positive score (0 is counted as positive).
See Also
Member Functions Detail
AlignmentStats::AlignmentStats();
Constructor
All members are initialized to 0.
Interface Functions Detail
void clear(stats);
Resets all members to 0.
Parameters
stats
|
AlignmentStats object to clear. |
---|
Member Variables Detail
int AlignmentStats::alignmentScore
The resulting alignment score.
unsigned AlignmentStats::numGapExtensions
Number of gap extension events.
unsigned AlignmentStats::numGapOpens
Number of gap open events.
unsigned AlignmentStats::numMatches
Number of match (identity) events.
unsigned AlignmentStats::numMismatches
Number of mismatch (not identity) events.
unsigned AlignmentStats::numNegativeScores
Number of residues aligned with negative score.
unsigned AlignmentStats::numPositiveScores
Number of residues aligned with positive score (0 is counted as positive).