Class
ContigStoreElementRepresents a single contig.
Represents a single contig.
Defined in | <seqan/store.h> |
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Signature |
template <typename TContigSeq, typename TGapAnchor[, typename TSpec]>
class ContigStoreElement;
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Template Parameters
TContigSeq |
Type to store the contig sequence. |
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TGapAnchor |
Type of the GapAnchor. |
TSpec |
Specializing type. Default: void. |
Member Function Overview
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ContigStoreElement::ContigStoreElement();
Constructor.
Member Typedef Overview
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typedef (...) ContigStoreElement::TContigSeq;
Type fo the seq member. -
typedef (...) ContigStoreElement::TGapAnchors;
Type of the gaps member. -
typedef (...) ContigStoreElement::TPos;
Type of the fileBeginPos and fileEndPos emmbers. -
typedef (...) ContigStoreElement::TSpec;
The specializing type.
Member Variable Overview
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TPos ContigStoreElement::fileBeginPos
Begin position of the contig sequence fragment in the file. -
TPos ContigStoreElement::fileEndPos
End position of the contig sequence fragment in the file. -
TId ContigStoreElement::fileId
Refers to a file in the contigFileStore or is INVALID_ID if the contig has no file association. -
TGaps ContigStoreElement::gaps
String of contig GapAnchor objects. CAn be used to create a AnchorGaps alignment row. -
TId ContigStoreElement::INVALID_ID
Constant to represent an invalid. -
TContigSeq ContigStoreElement::seq
Contig sequence. -
unsigned ContigStoreElement::usage
Count the number of locks.
Detailed Description
Value type of the contigStore string.
Member Functions Detail
ContigStoreElement::ContigStoreElement();
Constructor.
Set fileId to INVALID_ID and usage, fileBeginPos, fileEndPos to 0.
Member Typedef Detail
typedef (...) ContigStoreElement::TContigSeq;
Type fo the seq member.
typedef (...) ContigStoreElement::TGapAnchors;
Type of the gaps member.
typedef (...) ContigStoreElement::TPos;
Type of the fileBeginPos and fileEndPos emmbers.
typedef (...) ContigStoreElement::TSpec;
The specializing type.
Member Variables Detail
TPos ContigStoreElement::fileBeginPos
Begin position of the contig sequence fragment in the file.
TPos ContigStoreElement::fileEndPos
End position of the contig sequence fragment in the file.
TId ContigStoreElement::fileId
Refers to a file in the contigFileStore or is INVALID_ID if the contig has no
file association.
TGaps ContigStoreElement::gaps
String of contig GapAnchor objects. CAn be used to create a AnchorGaps
alignment row.
TId ContigStoreElement::INVALID_ID
Constant to represent an invalid.
TContigSeq ContigStoreElement::seq
Contig sequence.
unsigned ContigStoreElement::usage
Count the number of locks.