Class
GffRecordRepresent a record from a Gff file.
Represent a record from a Gff file.
Defined in | <seqan/gff_io.h> |
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Signature |
class GffRecord;
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Member Function Overview
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float GffRecord::INVALID_SCORE();
Returns invalid score (NaN float value).
Interface Function Overview
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void clear(record);
Reset a GffRecord object.
Member Variable Overview
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__int32 GffRecord::beginPos
The begin position of the record. -
__int32 GffRecord::endPos
The end position of the record. -
__int32 GffRecord::INVALID_IDX
Static member with invalid/sentinel rID value. -
__int32 GffRecord::INVALID_POS
Static member with invalid/sentinel position value. -
char GffRecord::phase
The phase of the record. -
CharString GffRecord::ref
The sequence name of the record. -
__int32 GffRecord::rID
Integer representing ref, defaults to INVALID_IDX. -
float GffRecord::score
The score of the record. -
CharString GffRecord::source
The source of the record. -
char GffRecord::strand
The strand the record belongs to. -
TCharStringSet GffRecord::tagName
The names of the attributes of the record, StringSet of CharString. -
TCharStringSet GffRecord::tagValue
The values of the attributes of the record, StringSet of CharString. -
CharString GffRecord::type
The type of the record.
Member Functions Detail
float GffRecord::INVALID_SCORE();
Returns invalid score (NaN float value).
Interface Functions Detail
void clear(record);
Reset a GffRecord object.
Parameters
record
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The GffRecord to reset. |
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Member Variables Detail
__int32 GffRecord::beginPos
The begin position of the record.
__int32 GffRecord::endPos
The end position of the record.
__int32 GffRecord::INVALID_IDX
Static member with invalid/sentinel rID value.
__int32 GffRecord::INVALID_POS
Static member with invalid/sentinel position value.
char GffRecord::phase
The phase of the record.
Remarks
For features of type "CDS", the phase indicates where the feature begins with reference to the reading frame. The phase is one of the integers 0, 1, or 2, indicating the number of bases that should be removed from the beginning of this feature to reach the first base of the next codon
CharString GffRecord::ref
The sequence name of the record.
__int32 GffRecord::rID
Integer representing ref, defaults to INVALID_IDX.
float GffRecord::score
The score of the record.
CharString GffRecord::source
The source of the record.
char GffRecord::strand
The strand the record belongs to.
TCharStringSet GffRecord::tagName
The names of the attributes of the record, StringSet of CharString.
Remarks
For each value there is a name associated in GffRecord::tagName.
TCharStringSet GffRecord::tagValue
The values of the attributes of the record, StringSet of CharString.
Remarks
For each name there is a value associated in GffRecord::tagValue.
CharString GffRecord::type
The type of the record.