Class
SeedDiagonalStore the information about a seed segment.
Store the information about a seed segment.
Defined in | <seqan/seeds.h> |
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Signature |
template <typename TPosition, typename TSize>
class SeedDiagonal;
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Template Parameters
TSize |
The type to use for the seed length. |
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TPosition |
The type to use for positions. |
Member Function Overview
Interface Metafunction Overview
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Position<TDiagonal>::Type;
The position type of a SeedDiagonal. -
Size<TDiagonal>::Type;
The size type of a SeedDiagonal.
Member Variable Overview
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TPosition SeedDiagonal::beginPositionH
The position in the database sequence (horizontal). -
TPosition SeedDiagonal::beginPositionV
The position in the query sequence (vertical). -
TSize SeedDiagonal::length
The length of the diagonal.
Member Functions Detail
SeedDiagonal::SeedDiagonal();
SeedDiagonal::SeedDiagonal(beginPosH, beginPosV, length);
Constructor
Parameters
beginPosH
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The begin position in the horizontal orientation. |
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beginPosV
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The begin position in the vertical orientation. |
length
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The length of the seed diagonal. |
Member Variables Detail
TPosition SeedDiagonal::beginPositionH
The position in the database sequence (horizontal).
TPosition SeedDiagonal::beginPositionV
The position in the query sequence (vertical).
TSize SeedDiagonal::length
The length of the diagonal.