Class
SequenceOutputOptionsConfiguration for writing sequence (FASTA/FASTQ) files.
Configuration for writing sequence (FASTA/FASTQ) files.
Defined in | <seqan/seq_io.h> |
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Signature |
struct SequenceOutputOptions;
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Member Function Overview
Member Variable Overview
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int SequenceOutputOptions::lineLength
Length of the lines when writing out. -
bool SequenceOutputOptions::qualMeta
Whether or not to write the meta information into the "+" line before the qualities (interpreted for FASTQ only). Default is false.
Detailed Description
This struct is used for the configuration of writing out FASTA and FASTQ files.
Member Functions Detail
explicit SequenceOutputOptions::SequenceOutputOptions([lineLength[, qualMeta]]);
Constructor
Parameters
lineLengths
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int with the line length, defauls to -1. |
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qualMeta
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bool flag whether to write out the meta text after the + in FASTQ. |
Member Variables Detail
int SequenceOutputOptions::lineLength
Length of the lines when writing out.
Set to -1 for default behaviour (no line break for FASTQ, line length of 70 for FASTA) and 0 for disabling line breaks.
bool SequenceOutputOptions::qualMeta
Whether or not to write the meta information into the "+" line before the qualities (interpreted for
FASTQ only). Default is false.