Typedef Pam200
PAM200 scoring matrix.

Defined in <seqan/score.h>
Signature typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam200> > Pam200;

Overview

A      3
R     -2    7
N      0    0    3
D      0   -2    3    5
C     -3   -4   -5   -6   12
Q     -1    1    1    2   -7    5
E      0   -2    2    4   -7    3    5
G      1   -4    0    0   -4   -2    0    6
H     -2    2    2    0   -4    3    0   -3    8
I     -1   -2   -2   -3   -3   -3   -3   -3   -3    6
L     -2   -4   -4   -5   -7   -2   -4   -5   -3    2    7
K     -2    4    1    0   -7    1    0   -2   -1   -2   -4    6
M     -2   -1   -2   -4   -6   -1   -3   -4   -3    2    4    1    8
F     -4   -5   -4   -7   -6   -6   -7   -6   -2    1    2   -7    0   10
P      1    0   -1   -2   -4    0   -1   -1   -1   -3   -3   -2   -3   -6    7
S      1   -1    1    0    0   -1    0    1   -1   -2   -4    0   -2   -4    1    2
T      1   -1    0    0   -3   -1   -1    0   -2    0   -2    0   -1   -4    0    2    4
W     -7    2   -5   -8   -9   -6   -9   -8   -3   -6   -2   -4   -5    0   -7   -3   -6   18
Y     -4   -5   -2   -5    0   -5   -5   -6    0   -2   -2   -5   -3    7   -6   -3   -3   -1   11
V      0   -3   -2   -3   -2   -3   -2   -2   -3    4    2   -3    2   -2   -2   -1    0   -8   -3    5
B      0   -1    3    4   -5    1    3    0    1   -3   -4    0   -3   -6   -1    1    0   -6   -4   -3    3
Z      0    0    1    3   -7    4    4   -1    2   -3   -3    0   -2   -6   -1   -1   -1   -7   -5   -2    2    4
X      0   -1    0   -1   -4   -1   -1   -1   -1   -1   -2   -1   -1   -3   -1    0    0   -5   -3   -1   -1   -1   -1
*     -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9   -9    1

+      A    R    N    D    C    Q    E    G    H    I    L    K    M    F    P    S    T    W    Y    V    B    Z    X    *