Class BamIndex
Access to BAM indices.

All Subcl's BaiBamIndex
Defined in <seqan/bam_io.h>
Signature template <typename TSpec> class BamIndex;

Interface Function Overview

Detailed Description

This is an abstract class; don't use it itself but its specializations.

See Also

Interface Functions Detail

__uint64 getUnalignedCount(index);

Query index for number of unaligned reads.


index Index to query.


__uint64 The number of unaligned reads.

bool open(index, filename);

Load a BAM index from a given file name.


index Target data structure.
filename Path to file to load. Types: char const *


bool Returns true on success, false otherwise.