Group Alignment Algorithm Tags
Tags for selecting algorithms.

Grouped Tags Overview

Grouped Tags Detail

struct DynamicGaps_; typedef Tag<DynamicGaps_> DynamicGaps;

Defined in
<seqan/align.h>
Tag for selecting dynamic gap cost model. This tag can be used for all standard DP algorithms.

struct Gotoh_; typedef Tag<Gotoh_> Gotoh;

Defined in
<seqan/align.h>
Tag for selecting Gotoh DP algorithm.

struct Hirschberg_; typedef Tag<Hirschberg_> Hirschberg;

Defined in
<seqan/align.h>
Tag for selecting Hirschberg's DP algorithm.

struct MyersBitVector_; typedef Tag<MyersBitVector_> MyersBitVector;

Defined in
<seqan/align.h>
Tag for selecting Myers' bit-vector algorithm.

struct MyersHirschberg_; typedef Tag<MyersHirschberg_> MyersHirschberg;

Defined in
<seqan/align.h>
Tag for selecting a combination of Myers' bit-vector algorithm with Hirschberg's algorithm.

struct Hirschberg_; typedef Tag<Hirschberg_> NeedlemanWunsch;

Defined in
<seqan/align.h>
Tag for selecting NeedlemanWunsch DP algorithm.