Group SeedExtensionTags
Tags for selecting seed extension algorithm.

Grouped Tags Overview

See Also

Grouped Tags Detail

typedef Tag<GappedXDrop_> const GappedXDrop;

Defined in
<seqan/seeds.h>
Gapped extension of a seed until score drops below a given value; only works for SimpleSeed.

typedef Tag<MatchExtend_> const MatchExtend;

Defined in
<seqan/seeds.h>
Extends a seed until a mismatch occurs.

typedef Tag<UngappedXDrop_> const UnGappedXDrop;

Defined in
<seqan/seeds.h>
Ungapped extension of a seed until score drops below a given value.