fn() addToProfileSequence-to-profile alignment with sequence integration.
Sequence-to-profile alignment with sequence integration.
Defined in | <seqan/align_profile.h> |
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Signature |
void addToProfile(profile, seq[, lDiag, uDiag]);
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Parameters
profile
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The profile to add seq to. A String over ProfileChar. |
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seq
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String to align to profile. |
lDiag
|
Lower diagonal for alignment (SignedIntegerConcept). |
uDiag
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Upper diagonal for alignment (SignedIntegerConcept). |
Detailed Description
seq will be aligned to profile using globalAlignment. To compute a banded alignment lDiag and uDiag have to be given. The resulting alignment will then be integrated into profile by incrementing the count values of the profile entries that correspond to the seq row of the alignment.
Data Races
Thread safety unknown!