fn() upgmaTreeComputes a guide tree from a distance matrix.
Computes a guide tree from a distance matrix.
Defined in | <seqan/graph_msa.h> |
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Signature |
void upgmaTree(mat, tree[, tag]);
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Parameters
mat
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A matrix with pairwise distance values. Can be a String representing a (dense) square matrix or a UndirectedGraph where each edge weight corresponds to the distance between sequence i and j (if the edge is present). |
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tree
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An undirected guide tre. |
tag
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Tag indicating how to calcualte the cluster distances. See: UpgmaConfiguratorTags. Default: UpgmaWeightAvg. |
Data Races
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