fn() matchRefinement
Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping.

Defined in <seqan/graph_align.h>
Signature void matchRefinement(matches, stringSet[, scoringScheme], refinedGraph);


matches The set of matches. Types: Fragment, Align, Alignment Graph
refinedGraph The resulting refined set of matches stored in a graph. Types: Alignment Graph
stringSet The StringSet containing the sequences which the matches lie on. Types: StringSet
scoringScheme The scoring scheme used to score the refined matches (scores are attached to edges in the refined AlignmentGraph). If no scoring scheme is given, all edges get weight 1. Types: Score

Data Races

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