Typedef Pam40
PAM40 scoring matrix.

Defined in <seqan/score.h>
Signature typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam40> > Pam40;

Overview

A     6
B    -3   6
C    -6 -11   9
D    -3   6 -12   7
E    -2   2 -12   3   7
F    -7  -9 -11 -13 -12   9
G    -1  -2  -8  -3  -3  -8   6
H    -6  -1  -7  -3  -4  -5  -8   9
I    -4  -5  -5  -6  -5  -2  -9  -8   8
J    -5  -7  -9  -9  -7  -2  -9  -7   4   4
K    -6  -2 -12  -4  -4 -12  -6  -5  -5  -6   6
L    -5  -8 -13 -11  -8  -2  -9  -5  -1   3  -7   7
M    -4  -8 -12  -9  -6  -3  -7  -9   0   1  -1   1  11
N    -3   6  -9   2  -1  -8  -2   1  -4  -5   0  -6  -7   7
O    -3  -4  -8  -5  -4  -7  -4  -4  -4  -5  -4  -5  -4  -3  -4
P    -1  -6  -7  -7  -5  -9  -5  -3  -7  -7  -6  -6  -7  -5  -4   8
Q    -3  -2 -12  -2   2 -11  -6   1  -7  -6  -2  -4  -3  -3  -4  -2   8
R    -6  -6  -7  -9  -8  -8  -8  -1  -5  -7   1  -8  -3  -5  -5  -3  -1   8
S     0  -1  -2  -3  -4  -6  -1  -5  -6  -7  -3  -7  -5   0  -2  -1  -4  -2   6
T     0  -2  -7  -4  -5  -8  -5  -6  -2  -4  -2  -6  -3  -1  -3  -3  -5  -5   1   7
U    -3  -4  -8  -5  -4  -7  -4  -4  -4  -5  -4  -5  -4  -3  -4  -4  -4  -5  -2  -3  -4
V    -2  -7  -5  -7  -6  -7  -5  -6   2   0  -8  -2  -1  -7  -4  -5  -6  -7  -5  -2  -4   7
W   -12  -9 -14 -13 -15  -4 -13  -6 -12  -9 -10  -5 -11  -7  -9 -12 -11  -1  -4 -11  -9 -14  13
Y    -7  -6  -3 -10  -8   2 -12  -3  -5  -6  -8  -6 -10  -4  -7 -12 -10  -9  -6  -6  -7  -6  -4  10
Z    -2   1 -12   2   6 -12  -4   0  -5  -6  -3  -6  -4  -2  -4  -3   6  -3  -4  -5  -4  -6 -13  -8   6
X    -3  -4  -8  -5  -4  -7  -4  -4  -4  -5  -4  -5  -4  -3  -4  -4  -4  -5  -2  -3  -4  -4  -9  -7  -4  -4
*   -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15 -15   1

      A   B   C   D   E   F   G   H   I   J   K   L   M   N   O   P   Q   R   S   T   U   V   W   Y   Z   X   *