Class
BlastRecordA record of blast-matches (belonging to one query).
A record of blast-matches (belonging to one query).
Implements | FormattedFileRecordConcept |
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All Impl'd | AssignableConcept, CopyConstructibleConcept, DefaultConstructibleConcept, FormattedFileRecordConcept |
Defined in | <seqan/blast.h> |
Signature |
struct BlastRecord<TMatch, ...> { ... };
|
Template Parameters
TMatch |
Specialization of BlastMatch |
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TQID |
Type of qId, defaults to TMatch::TQId |
TQAccs |
Type of qAccs, defaults to std::vector of std::string |
TLcaId |
Type of lcaId, defaults to std::string |
TLcaTaxId |
Type of lcaTaxId, defaults to uint32_t |
Member Function Overview
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BlastRecord::BlastRecord() BlastRecord::BlastRecord(qid)
constructor, can be passed the qId
Member Functions Inherited From AssignableConcept
Member Typedef Overview
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typedef TBlastMatch_ TBlastMatch;
type of the contained matches
Member Variable Overview
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TPos BlastRecord::lcaId
String identifier (e.g. scientific name) of the lowest common ancestor of all matches. -
TPos BlastRecord::lcaTaxId
Numeric taxonomic identifier of the lowest common ancestor of all matches. -
std::list<TBlastMatch> BlastRecord::matches
list of the contained matches -
TQId BlastRecord::qAccs
The Accession number(s) of the query. -
TQId BlastRecord::qId
verbose Id of the query -
TPos BlastRecord::qLength
length of the query sequence
Member Functions Detail
BlastRecord::BlastRecord()
BlastRecord::BlastRecord(qid)
constructor, can be passed the qId
Data Races
Thread safety unknown!
Member Typedef Detail
typedef TBlastMatch_ TBlastMatch;
type of the contained matches
Member Variables Detail
TPos BlastRecord::lcaId
String identifier (e.g. scientific name) of the lowest common ancestor of all matches.
TPos BlastRecord::lcaTaxId
Numeric taxonomic identifier of the lowest common ancestor of all matches.
std::list<TBlastMatch> BlastRecord::matches
list of the contained matches
TQId BlastRecord::qAccs
The Accession number(s) of the query.
TQId BlastRecord::qId
verbose Id of the query
TPos BlastRecord::qLength
length of the query sequence