fn() sumOfPairsScoreGiven a multiple alignment, this function calculates the sum-of-pairs score.
Given a multiple alignment, this function calculates the sum-of-pairs score.
Defined in | <seqan/graph_msa.h> |
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Signature |
TScoreValue sumOfPairsScore(graph, scoringScheme);
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Parameters
graph
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An AlignmentGraph to use for the evaluation. |
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ScoringScheme
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The Score to use. |
Return Values
TScoreValue |
The SOP score of the MSA (Metafunction: Value of the type of scoringScheme). |
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Detailed Description
This function does NOT assume independent columns. That is, gap openings are properly scored. If you want the fast version assuming independ columns use sumOfPairsScoreInd.
Data Races
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