fn() alignmentEvaluation
Given a multiple sequence alignment, this function calculates different kinds of alignment statistics.

Defined in <seqan/graph_msa.h>
Signature TScoreVal alignmentEvaluation(graph, scoringScheme, gapExCount, gapCount, pairCount, numPairs, len);


graph The AlignmentGraph object to compute statistics for.
scoringScheme The Score object to use.
gapExCount The number of gap extensions.
gapCount The number of gaps.
pairCount The number of aligned pairs.
numPairs Counter for each pair. A String resized to size n*n, where n is the ValueSize of the alphabet of the aligned sequences.
len Alignment length.

Return Values

TScoreVal The score of the alignment (Metafunction: Value).

Data Races

Thread safety unknown!